SRX5706711
EC 046 HCCaEC ChIP-seq H3K27ac

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Cardiovascular
Cell type
Carotid artery endothelial cells
NA
NA

Attributes by original data submitter

Sample

isolate
JTK031
age
23
biomaterial_provider
Youichiro Wada
sex
male
tissue
Common carotid artery
cell_type
Carotid artery endothelial cells
race
Asian
sample_type
cell culture

Sequenced DNA Library

library_name
EC46_H3K27ac
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
36969428
Reads aligned (%)
99.1
Duplicates removed (%)
7.8
Number of peaks
26770 (qval < 1E-05)

hg19

Number of total reads
36969428
Reads aligned (%)
98.5
Duplicates removed (%)
8.8
Number of peaks
26583 (qval < 1E-05)

Base call quality data from DBCLS SRA