SRX5706693
EC 160 HRAEC ChIP-seq H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Kidney
Cell type
Renal artery endothelial cells
NA
NA

Attributes by original data submitter

Sample

isolate
JTK059
age
69
biomaterial_provider
Hiroshi Fukuhara
sex
female
tissue
Renal artery
cell_type
Renal artery endothelial cells
race
Asian
sample_type
cell culture

Sequenced DNA Library

library_name
EC160_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
39425583
Reads aligned (%)
99.2
Duplicates removed (%)
9.7
Number of peaks
19291 (qval < 1E-05)

hg19

Number of total reads
39425583
Reads aligned (%)
98.8
Duplicates removed (%)
10.4
Number of peaks
19273 (qval < 1E-05)

Base call quality data from DBCLS SRA