Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Esr1

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

source_name
WT mammary glands treated with E2h
strain
BALB/c
tissue
Mammary gland
age
6 weeks
genotype
WT
chip antibody
ERα (Santa Cruz, sc-542)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Mammary glands were treated with a TissueTearer followed by dounce-homogenization in lysis buffer. Lysates were sonicated and ERα-DNA complexes were isolated using a ERα antibody. ChIP and input DNA were amplified using the Illumina ChIP-Seq DNA Sample Prep Kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
72789307
Reads aligned (%)
97.9
Duplicates removed (%)
55.4
Number of peaks
4248 (qval < 1E-05)

mm9

Number of total reads
72789307
Reads aligned (%)
97.7
Duplicates removed (%)
55.4
Number of peaks
4252 (qval < 1E-05)

Base call quality data from DBCLS SRA