Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Uterus
Cell type
Ishikawa
Primary Tissue
Uterus
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Endometrioid adenocarcinoma_1 hr 10nM E2
cell line
Ishikawa
cell type
Endometrioid adenocarcinoma
treatment
1 hr 10nM E2
treatment
WT

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
250,000 cells were collected and ATAC assay was performed as described in Buenrostro, et al. 2013. Library was constructed as described in Buenrostro, et al. 2013.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
34356754
Reads aligned (%)
97.2
Duplicates removed (%)
72.6
Number of peaks
17822 (qval < 1E-05)

hg19

Number of total reads
34356754
Reads aligned (%)
96.9
Duplicates removed (%)
72.7
Number of peaks
17872 (qval < 1E-05)

Base call quality data from DBCLS SRA