Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Uterus
Cell type
Ishikawa
Primary Tissue
Uterus
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Endometrioid adenocarcinoma_1 hr 0.1% DMSO
cell line
Ishikawa ETV4 KO clone 2
cell type
Endometrioid adenocarcinoma
treatment
1 hr 0.1% DMSO
treatment
ETV4 KO

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
250,000 cells were collected and ATAC assay was performed as described in Buenrostro, et al. 2013. Library was constructed as described in Buenrostro, et al. 2013.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
39239331
Reads aligned (%)
97.3
Duplicates removed (%)
75.2
Number of peaks
29885 (qval < 1E-05)

hg19

Number of total reads
39239331
Reads aligned (%)
97.0
Duplicates removed (%)
75.3
Number of peaks
29800 (qval < 1E-05)

Base call quality data from DBCLS SRA