Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Uterus
Cell type
Ishikawa
Primary Tissue
Uterus
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
ER ChIP-seq
cell line
Ishikawa
cell type
Endometrioid adenocarcinoma cell line
chip antibody
Santa Cruz ERalpha (HC-20)
treatment
1 hr 10nM E2
genotype
WT

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
32436778
Reads aligned (%)
68.4
Duplicates removed (%)
15.8
Number of peaks
6981 (qval < 1E-05)

hg38

Number of total reads
32436778
Reads aligned (%)
68.9
Duplicates removed (%)
15.6
Number of peaks
6987 (qval < 1E-05)

Base call quality data from DBCLS SRA