Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
JMJD6

Cell type

Cell type Class
Neural
Cell type
CHP-134
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

source_name
CHP-134 neuroblastoma cells
cell line
CHP-134 neuroblastoma cells
cell type
peripheral nervous system tumor cell
chip antibody
JMJD6 antibody (ab64575)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. DNA immunoprecipitated by the antibodies were purified and subjected to sequencing with Illumina HiSeq 2000 at Ramaciotti Centre for Genomics, University of New South Wales, Australia

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
8907814
Reads aligned (%)
78.7
Duplicates removed (%)
14.1
Number of peaks
397 (qval < 1E-05)

hg38

Number of total reads
8907814
Reads aligned (%)
79.8
Duplicates removed (%)
13.5
Number of peaks
349 (qval < 1E-05)

Base call quality data from DBCLS SRA