Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Digestive tract
Cell type
Colon
NA
NA

Attributes by original data submitter

Sample

source_name
colon tissue
strain
C57BL/6
tissue
colon tissue
age
7 week older
antibody
H3K27ac

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Total DNA fragments were purified and then amplified to generate libraries using the VATHS Universal DNA Library Prep Kit for Illumina (Vazyme ND604) and sequenced by Illumina Hiseq X Ten.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
17187377
Reads aligned (%)
0.0
Duplicates removed (%)
5.4
Number of peaks
807 (qval < 1E-05)

mm9

Number of total reads
17187377
Reads aligned (%)
0.0
Duplicates removed (%)
5.4
Number of peaks
808 (qval < 1E-05)

Base call quality data from DBCLS SRA