Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Tcf7l2

Cell type

Cell type Class
Adipocyte
Cell type
Preadiocytes
NA
NA

Attributes by original data submitter

Sample

source_name
immotalized differentiated preadipocytes
cell type
immortalized primary preadiocytes
genotype
WT
passages
10-13
strain
C57BL/6
chip antibody
TCF7L2 (Cell signaling #2569 lot#4)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and TCF7L2-DNA complexes were isolated with antibody. Libraries were prepared according to DNA SMART ChIP-Seq Kit (Takara #634865) Briefly, a priming site is first added to the 3' end of the DNA template using the Terminal Deoxynucleotidyl Transferase. This is followed by annealing of a proprietary DNA SMART Poly(dA) Primer, which anneals to the T-tail added by the Terminal Deoxynucleotidyl Transferase. This primer is then used by the SMARTScribeTM Reverse Transcriptase (RT) to copy the DNA strand. When the SMARTScribe RT reaches the 5' end of the DNA template, the enzyme's terminal transferase activity adds a few additional nucleotides to the 3' end of the newly synthesized DNA. The carefully designed DNA SMART Oligonucleotide base-pairs with these additional non-template nucleotides and creates an extended template, enabling the SMARTScribe RT to continue replicating to the end of the oligonucleotide. Sequencing libraries are then generated by PCR-mediated addition of Illumina adapters using primers compatible with regions on the DNA SMART Poly(dA) Primer and the DNA SMART Oligonucleotide

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
44994421
Reads aligned (%)
94.5
Duplicates removed (%)
23.4
Number of peaks
7512 (qval < 1E-05)

mm9

Number of total reads
44994421
Reads aligned (%)
94.1
Duplicates removed (%)
23.3
Number of peaks
7803 (qval < 1E-05)

Base call quality data from DBCLS SRA