Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3R26cit

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7
cell line
MCF-7 breast cancer cells
agent
E2
time
10min
chip antibody
H3R26Cit (AbCam, catalog# ab19847, lot# 135757)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
12117691
Reads aligned (%)
58.2
Duplicates removed (%)
1.6
Number of peaks
726 (qval < 1E-05)

hg19

Number of total reads
12117691
Reads aligned (%)
57.7
Duplicates removed (%)
1.9
Number of peaks
651 (qval < 1E-05)

Base call quality data from DBCLS SRA