Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

isolate
missing
age
missing
biomaterial_provider
Human liver tissue was obtained from Prof. Per Artursson, Uppsala University, Biomedicinskt Centrum BMC, Husargatan 3752 37 Uppsala, SWEDEN
sex
male
tissue
liver

Sequenced DNA Library

library_name
ChIP-K4me3-liver-rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
10791647
Reads aligned (%)
93.1
Duplicates removed (%)
1.3
Number of peaks
25319 (qval < 1E-05)

hg19

Number of total reads
10791647
Reads aligned (%)
92.6
Duplicates removed (%)
1.3
Number of peaks
25187 (qval < 1E-05)

Base call quality data from DBCLS SRA