Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
pro-B cell
strain
BALB/c
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was carried out using the Simple ChIP Enzymatic Chromatin IP Kit (Cell Signaling Technology Inc., Danvers, MA) according to the manufacturer's instructions. SMARTer® ThruPLEX® Tag-seq Kit (Clontech)

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
49404435
Reads aligned (%)
94.7
Duplicates removed (%)
9.5
Number of peaks
243 (qval < 1E-05)

mm9

Number of total reads
49404435
Reads aligned (%)
94.5
Duplicates removed (%)
9.5
Number of peaks
251 (qval < 1E-05)

Base call quality data from DBCLS SRA