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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me2
wikigenes
PDBj
CellType: Pro-B cells
ATCC
MeSH
RIKEN BRC
SRX5598359
GSM3690833: PK220K.H3K4me2 ChIPSeq; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me2
Cell type
Cell type Class
Blood
Cell type
Pro-B cells
NA
NA
Attributes by original data submitter
Sample
source_name
pro-B cell
strain
BALB/c
chip antibody
H3K4me2 monoclonal antibody (Active Motif)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was carried out using the Simple ChIP Enzymatic Chromatin IP Kit (Cell Signaling Technology Inc., Danvers, MA) according to the manufacturer's instructions. SMARTer® ThruPLEX® Tag-seq Kit (Clontech)
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
34409985
Reads aligned (%)
96.7
Duplicates removed (%)
11.1
Number of peaks
19570 (qval < 1E-05)
mm9
Number of total reads
34409985
Reads aligned (%)
96.6
Duplicates removed (%)
11.1
Number of peaks
19585 (qval < 1E-05)
Base call quality data from
DBCLS SRA