Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
ATAC_KO_FACS-sorted progenitor B-cells
strain background
C57BL/6J
genotype/variation
Erg fl/fl;CD2iCre
tissue
Bone marrow
cell type
Progenitor B-cells
cell subtype
Lin-, B220+, CD19+, CD93+ CD43+/lo

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq was performed on 10,000 sorted progenitor B-cells as previously described (Buenrostro J D, et. al 2015. Current Protocols in Molecular Biology 109: 1-9). Sorted cells were permeabilized and exposed to 0.5µl transposase. ATAC-seq libraries were constructed using the Nextera DNA library Prep kit (Illumina) according to the instructions by the manufacturer, and sequencing was performed on a HiSeq 1500 Illumina machine.

Sequencing Platform

instrument_model
Illumina HiSeq 1500

mm10

Number of total reads
42560074
Reads aligned (%)
93.5
Duplicates removed (%)
46.2
Number of peaks
41245 (qval < 1E-05)

mm9

Number of total reads
42560074
Reads aligned (%)
93.4
Duplicates removed (%)
46.2
Number of peaks
41208 (qval < 1E-05)

Base call quality data from DBCLS SRA