SRX5585962
GSM3689200: HA WT 4ºC rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Adipocyte
Cell type
Brown adipocytes
NA
NA

Attributes by original data submitter

Sample

source_name
Brown Adipose Tissue
treatment
exposed to chronic cold (4C)
tissue
Brown Adipose Tissue
strain
C57BL/6
chip antibody
HA magnetic beads (Pierce, 88837)
genotype
WT

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared according to Illumina's ChIP Sequencing Sample Preparation Guide.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
35243931
Reads aligned (%)
92.4
Duplicates removed (%)
63.6
Number of peaks
408 (qval < 1E-05)

mm9

Number of total reads
35243931
Reads aligned (%)
92.3
Duplicates removed (%)
63.7
Number of peaks
397 (qval < 1E-05)

Base call quality data from DBCLS SRA