SRX5585959
GSM3689197: HA RevA BAT 29ºC 3019; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Adipocyte
Cell type
Brown adipocytes
NA
NA

Attributes by original data submitter

Sample

source_name
Brown Adipose Tissue
treatment
thermoneutrality (29C)
tissue
Brown Adipose Tissue
strain
C57BL/6
chip antibody
HA magnetic beads (Pierce, 88837)
genotype
HA-RevErba

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared according to Illumina's ChIP Sequencing Sample Preparation Guide.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
33147400
Reads aligned (%)
97.3
Duplicates removed (%)
52.2
Number of peaks
1368 (qval < 1E-05)

mm9

Number of total reads
33147400
Reads aligned (%)
97.2
Duplicates removed (%)
52.3
Number of peaks
1375 (qval < 1E-05)

Base call quality data from DBCLS SRA