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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Epitope tags
wikigenes
PDBj
CellType: Brown adipocytes
ATCC
MeSH
RIKEN BRC
SRX5585954
GSM3689192: HA RevA BAT 4ºC 3030; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Epitope tags
Cell type
Cell type Class
Adipocyte
Cell type
Brown adipocytes
NA
NA
Attributes by original data submitter
Sample
source_name
Brown Adipose Tissue
treatment
exposed to chronic cold (4C)
tissue
Brown Adipose Tissue
strain
C57BL/6
chip antibody
HA magnetic beads (Pierce, 88837)
genotype
HA-RevErba
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared according to Illumina's ChIP Sequencing Sample Preparation Guide.
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
31010693
Reads aligned (%)
96.3
Duplicates removed (%)
60.7
Number of peaks
5126 (qval < 1E-05)
mm9
Number of total reads
31010693
Reads aligned (%)
96.2
Duplicates removed (%)
60.8
Number of peaks
5118 (qval < 1E-05)
Base call quality data from
DBCLS SRA