SRX5574391
GSM3686969: THP-1 gDNA-ChIP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
THP-1_gDNA-ChIP
cell line
THP-1
tissue/cell type
acute monocytic leukemia cell line
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIPseq was essentially done as described (Pham et al. 2012). Libraries were generated as described (Pham et al. 2012)

Sequencing Platform

instrument_model
Illumina HiSeq 1000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
21095274
Reads aligned (%)
97.8
Duplicates removed (%)
6.1
Number of peaks
1400 (qval < 1E-05)

hg19

Number of total reads
21095274
Reads aligned (%)
96.6
Duplicates removed (%)
7.6
Number of peaks
1283 (qval < 1E-05)

Base call quality data from DBCLS SRA