SRX5574390
GSM3686968: THP-1 Input-ChIP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
THP-1_Input-ChIP
cell line
THP-1
tissue/cell type
acute monocytic leukemia cell line
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIPseq was essentially done as described (Pham et al. 2012). Libraries were generated as described (Pham et al. 2012)

Sequencing Platform

instrument_model
Illumina HiSeq 1000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28258256
Reads aligned (%)
98.0
Duplicates removed (%)
16.3
Number of peaks
1167 (qval < 1E-05)

hg19

Number of total reads
28258256
Reads aligned (%)
96.8
Duplicates removed (%)
17.6
Number of peaks
1106 (qval < 1E-05)

Base call quality data from DBCLS SRA