Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SPI1

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
THP-1_PU.1-ChIP
cell line
THP-1
tissue/cell type
acute monocytic leukemia cell line
chip antibody
PU.1 (Santa Cruz, #sc-352X)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIPseq was essentially done as described (Pham et al. 2012). Libraries were generated as described (Pham et al. 2012)

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
38527801
Reads aligned (%)
77.1
Duplicates removed (%)
20.8
Number of peaks
50743 (qval < 1E-05)

hg38

Number of total reads
38527801
Reads aligned (%)
79.1
Duplicates removed (%)
19.5
Number of peaks
50670 (qval < 1E-05)

Base call quality data from DBCLS SRA