SRX5574387
GSM3686965: U-937 PU.1-ChIP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SPI1

Cell type

Cell type Class
Blood
Cell type
U-937
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Diffuse Large B Cell

Attributes by original data submitter

Sample

source_name
U-937_PU.1-ChIP
cell line
U-937
tissue/cell type
histiocytic lymphoma cell line
chip antibody
PU.1 (Santa Cruz, #sc-352X)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIPseq was essentially done as described (Pham et al. 2012). Libraries were generated as described (Pham et al. 2012)

Sequencing Platform

instrument_model
Illumina HiSeq 1000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
23008374
Reads aligned (%)
93.2
Duplicates removed (%)
10.6
Number of peaks
30073 (qval < 1E-05)

hg19

Number of total reads
23008374
Reads aligned (%)
92.3
Duplicates removed (%)
11.6
Number of peaks
30274 (qval < 1E-05)

Base call quality data from DBCLS SRA