Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
Cardiomyocytes
NA
NA

Attributes by original data submitter

Sample

source_name
heart
strain
C57BL/6
cell type
isolated adult ventricular cardiomyocytes
developmental stage
adult
genotype
EED overexpression
chip antibody
GFP (Rockland, 600-101-215)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The cardiomyocytes were isolated from the adult mice heart according to previous protocol, and the cardiomyocytes were fixed and then lysed. Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions accompanying the ChIP library preparation Kit (NEBE7370). Briefly, DNA was end-repaired. The blunt, phosphorylated ends were treated with TA ligase Master mix and NEBNext Adaptor for Illumina. After adaptor ligation, DNA was PCR amplified with Illumina primers for 15 cycles. The DNA library was purified and the size of DNA fragments was selected by AMPure XP beads. The libraries were then sent to be sequenced.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
36882568
Reads aligned (%)
97.2
Duplicates removed (%)
22.4
Number of peaks
177 (qval < 1E-05)

mm9

Number of total reads
36882568
Reads aligned (%)
97.1
Duplicates removed (%)
22.4
Number of peaks
135 (qval < 1E-05)

Base call quality data from DBCLS SRA