SRX5551014
GSM3681880: ChIP input SMAD4 BMDM notx rep2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
C57BL/6J
strain
C57BL/6J
antibody
input
treatment1
in vitro
treatment2
4 day cultured BMDMs
treatment3
No treatment

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
16539382
Reads aligned (%)
97.3
Duplicates removed (%)
16.2
Number of peaks
98 (qval < 1E-05)

mm9

Number of total reads
16539382
Reads aligned (%)
97.3
Duplicates removed (%)
16.2
Number of peaks
78 (qval < 1E-05)

Base call quality data from DBCLS SRA