Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pancreas
Cell type
Pancreas
MeSH Description
A nodular organ in the ABDOMEN that contains a mixture of ENDOCRINE GLANDS and EXOCRINE GLANDS. The small endocrine portion consists of the ISLETS OF LANGERHANS secreting a number of hormones into the blood stream. The large exocrine portion (EXOCRINE PANCREAS) is a compound acinar gland that secretes several digestive enzymes into the pancreatic ductal system that empties into the DUODENUM.

Attributes by original data submitter

Sample

isolate
ISL_4
age
35
biomaterial_provider
IIDP/Scharp-Lacy Institute
sex
male
tissue
Pancreas

Sequenced DNA Library

library_name
ISL_4
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
79314845
Reads aligned (%)
97.3
Duplicates removed (%)
38.2
Number of peaks
33902 (qval < 1E-05)

hg19

Number of total reads
79314845
Reads aligned (%)
96.8
Duplicates removed (%)
38.4
Number of peaks
33754 (qval < 1E-05)

Base call quality data from DBCLS SRA