Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cell line
Cell type
OSC
Tissue Source
ovary
Developmental Stage
adult stage

Attributes by original data submitter

Sample

source_name
OSC
cell type
ovarian somatic cell
knockdown
egg 4 days

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP libraries were raised using NEBNext Ultra II FS DNA Library Prep Kit for Illumina (NEB) according to the manufacturer's instructions

Sequencing Platform

instrument_model
Illumina MiSeq

dm6

Number of total reads
2293964
Reads aligned (%)
100.0
Duplicates removed (%)
9.3
Number of peaks
512 (qval < 1E-05)

dm3

Number of total reads
2293964
Reads aligned (%)
100.0
Duplicates removed (%)
8.0
Number of peaks
386 (qval < 1E-05)

Base call quality data from DBCLS SRA