Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Blood

Cell type

Th17 Cells

MeSH Description

A subset of helper-effector T-lymphocytes which synthesize and secrete INTERLEUKINS IL-17; IL-17F; and IL-22. These cytokines are involved in host defenses and tissue inflammation in autoimmune diseases.

Sample

source_name

Th17

treatment

DMSO

donor

2

day

Day 7

cell type

Th17

Sequenced DNA Library

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

other

library_construction_protocol

ATAC-seq was performed as described in Buenrostro et al. 2013.

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

12127465

Reads aligned (%)

89.6

Duplicates removed (%)

47.3

Number of peaks

9271 (qval < 1E-05)

hg19

Number of total reads

12127465

Reads aligned (%)

89.2

Duplicates removed (%)

47.6

Number of peaks

9194 (qval < 1E-05)