Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Blood
Cell type
Granulocytic-monocytic progenitors
NA
NA

Attributes by original data submitter

Sample

source_name
KO LGMP cells
strain
C57BL/6
chip-antibody
H3K27ac (D5E4, #8173, CST, Danvers, MA)
genotype
Prkaa1 and Prkaa2 double knockout
cell type
leukemia-GMP

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
50,000 WT or KO L-GMP cells were sorted and treated with Mnase, histone-DNA complexes were isolated with antibody ChIP DNA was purified for end repair, adapter ligation, and amplification using a NEB Ultra II library preparation kit following the manufacturer's protocols (New England BioLabs, Ipswich, MA)

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

mm10

Number of total reads
7099473
Reads aligned (%)
77.0
Duplicates removed (%)
17.7
Number of peaks
900 (qval < 1E-05)

mm9

Number of total reads
7099473
Reads aligned (%)
76.9
Duplicates removed (%)
17.6
Number of peaks
879 (qval < 1E-05)

Base call quality data from DBCLS SRA