Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Granulocytic-monocytic progenitors
NA
NA

Attributes by original data submitter

Sample

source_name
KO LGMP cells
strain
C57BL/6
chip-antibody
None
genotype
Prkaa1 and Prkaa2 double knockout
cell type
leukemia-GMP

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
50,000 WT or KO L-GMP cells were sorted and treated with Mnase, histone-DNA complexes were isolated with antibody ChIP DNA was purified for end repair, adapter ligation, and amplification using a NEB Ultra II library preparation kit following the manufacturer's protocols (New England BioLabs, Ipswich, MA)

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

mm10

Number of total reads
9660571
Reads aligned (%)
90.4
Duplicates removed (%)
6.2
Number of peaks
90 (qval < 1E-05)

mm9

Number of total reads
9660571
Reads aligned (%)
90.3
Duplicates removed (%)
6.2
Number of peaks
69 (qval < 1E-05)

Base call quality data from DBCLS SRA