Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Granulocytic-monocytic progenitors
NA
NA

Attributes by original data submitter

Sample

source_name
WT LGMP cells
strain
C57BL/6
chip-antibody
None
genotype
wild type
cell type
leukemia-GMP

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
50,000 WT or KO L-GMP cells were sorted and treated with Mnase, histone-DNA complexes were isolated with antibody ChIP DNA was purified for end repair, adapter ligation, and amplification using a NEB Ultra II library preparation kit following the manufacturer's protocols (New England BioLabs, Ipswich, MA)

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

mm10

Number of total reads
11525168
Reads aligned (%)
92.4
Duplicates removed (%)
6.8
Number of peaks
125 (qval < 1E-05)

mm9

Number of total reads
11525168
Reads aligned (%)
92.3
Duplicates removed (%)
6.9
Number of peaks
87 (qval < 1E-05)

Base call quality data from DBCLS SRA