Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse ES
cell type
mouse ES
strain
129/Ola
chip antibody
INPUT

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The cross-linked chromatin was sheared by sonication, and MNase treatment. To repair ChIP-DNA and Input-DNA ends, T4 DNA polymerase, Klenow enzyme and T4 polynucleotide kinase were used (New England Biolabs), and an A base was subsequently added to the 3'-end by the treatment of Klenow exo-. The adaptor ligation and the PCR amplification for 18 cycles of DNA fragments were performed with Illumina (PCR primer InPE1.0 & InPE2.0).

Sequencing Platform

instrument_model
Illumina HiSeq 1500

mm10

Number of total reads
32834795
Reads aligned (%)
98.3
Duplicates removed (%)
7.6
Number of peaks
316 (qval < 1E-05)

mm9

Number of total reads
32834795
Reads aligned (%)
98.2
Duplicates removed (%)
7.7
Number of peaks
305 (qval < 1E-05)

Base call quality data from DBCLS SRA