SRX5463254
GSM3639163: P213JKO mESC SUZ12 ChIP replicate1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Suz12

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
strain
129B6F1
chip antibody
Suz12 (Cell Signaling, Rabbit mAb, D39F6)
genotype
Pcl1-3 + Jarid2 KO
experiment type
ChIP-Seq

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Immunoprecipitation of formaldehyde cross-linked and sonicated cell lysate. NEBNext Ultra II protocol (NEB, E7645S)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
19461959
Reads aligned (%)
95.8
Duplicates removed (%)
19.3
Number of peaks
207 (qval < 1E-05)

mm9

Number of total reads
19461959
Reads aligned (%)
95.6
Duplicates removed (%)
19.3
Number of peaks
173 (qval < 1E-05)

Base call quality data from DBCLS SRA