Antigen

Antigen Class

RNA polymerase

Antigen

RNA polymerase II

Cell type

Cell type Class

Digestive tract

Cell type

Colon, Sigmoid

MeSH Description

A segment of the COLON between the RECTUM and the descending colon.

Sample

sex

male

tissue

sigmoid colon

lab

Richard Myers, HAIB

sample_type

tissue

age

54 year

donor ID

ENCDO451RUA

dev_stage

adult

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

extraction protocol: https://www.encodeproject.org/documents/a59e54bc-ec64-4401-8cf6-b60161e1eae9/@@download/attachment/EN-TEx%20ChIP-seq%20Protocol%20-%20Myers%20Lab.pdf extraction method: see document extraction protocol: https://www.encodeproject.org/documents/a59e54bc-ec64-4401-8cf6-b60161e1eae9/@@download/attachment/EN-TEx%20ChIP-seq%20Protocol%20-%20Myers%20Lab.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

68804101

Reads aligned (%)

89.2

Duplicates removed (%)

4.3

Number of peaks

56090 (qval < 1E-05)

hg19

Number of total reads

68804101

Reads aligned (%)

88.7

Duplicates removed (%)

4.5

Number of peaks

55671 (qval < 1E-05)