SRX5457490
GSM3636244: ChIP-seq from spleen (ENCLB893TFX); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Others
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.

Attributes by original data submitter

Sample

sample type
tissue
tissue
spleen
sex
male
dev_stage
adult
age
37 year
donor ID
ENCDO845WKR
lab
Richard Myers, HAIB

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction protocol: https://www.encodeproject.org/documents/a59e54bc-ec64-4401-8cf6-b60161e1eae9/@@download/attachment/EN-TEx%20ChIP-seq%20Protocol%20-%20Myers%20Lab.pdf extraction method: see document extraction protocol: https://www.encodeproject.org/documents/a59e54bc-ec64-4401-8cf6-b60161e1eae9/@@download/attachment/EN-TEx%20ChIP-seq%20Protocol%20-%20Myers%20Lab.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
42473114
Reads aligned (%)
93.0
Duplicates removed (%)
3.5
Number of peaks
6925 (qval < 1E-05)

hg19

Number of total reads
42473114
Reads aligned (%)
92.1
Duplicates removed (%)
3.7
Number of peaks
6455 (qval < 1E-05)

Base call quality data from DBCLS SRA