Antigen

Antigen Class

TFs and others

Antigen

ZNF596

Cell type

Cell type Class

Kidney

Cell type

293

Primary Tissue

Kidney

Tissue Diagnosis

Normal

Sample

sample type

cell line

cell line

HEK293

sex

female

health state

unknown

dev_stage

embryonic

age

unknown

donor ID

ENCDO000ABF

lab

Michael Snyder, Stanford

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/7047cb04-68a7-48be-b58b-6991f41ffbb6/@@download/attachment/ChIP-seq%20Biorupter%20Pico%20Manual%20TruSeq%20Protocol%20%28modified%20for%20HEK293%20GFP-ZNF%29.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

61108487

Reads aligned (%)

98.2

Duplicates removed (%)

28.2

Number of peaks

6296 (qval < 1E-05)

hg19

Number of total reads

61108487

Reads aligned (%)

97.6

Duplicates removed (%)

28.5

Number of peaks

5478 (qval < 1E-05)