ChIP-Atlas: SRX5457445

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Breast
Cell type: Breast epithelium
NA: NA

Attributes by original data submitter

Sample

sample type: tissue
tissue: breast epithelium
sex: male
dev_stage: adult
age: 54 year
donor ID: ENCDO451RUA
lab: Michael Snyder, Stanford

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: general protocol: https://www.encodeproject.org/documents/a6e8aca1-c1e5-4ad7-bceb-8ca2e661b909/@@download/attachment/ChIP-Seq%20Biorupter%20Pico%20BravoTruSeq%20protocol%20for%20Syapse.pdf

Sequencing Platform

instrument_model: Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 58701196
Reads aligned (%): 95.0
Duplicates removed (%): 14.5
Number of peaks: 1919 (qval < 1E-05)

hg19

Number of total reads: 58701196
Reads aligned (%): 93.5
Duplicates removed (%): 14.8
Number of peaks: 790 (qval < 1E-05)

Base call quality data from DBCLS SRA