Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Cardiovascular

Cell type

Aorta, Thoracic

MeSH Description

The portion of the descending aorta proceeding from the arch of the aorta and extending to the DIAPHRAGM, eventually connecting to the ABDOMINAL AORTA.

Sample

sample type

tissue

tissue

thoracic aorta

sex

male

dev_stage

adult

age

37 year

donor ID

ENCDO845WKR

lab

Michael Snyder, Stanford

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/a6e8aca1-c1e5-4ad7-bceb-8ca2e661b909/@@download/attachment/ChIP-Seq%20Biorupter%20Pico%20BravoTruSeq%20protocol%20for%20Syapse.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

41387140

Reads aligned (%)

95.9

Duplicates removed (%)

6.9

Number of peaks

1542 (qval < 1E-05)

hg19

Number of total reads

41387140

Reads aligned (%)

94.5

Duplicates removed (%)

7.0

Number of peaks

883 (qval < 1E-05)