ChIP-Atlas: SRX5457429

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Epidermis
Cell type: Suprapubic skin
NA: NA

Attributes by original data submitter

Sample

sample type: tissue
tissue: suprapubic skin
sex: female
dev_stage: adult
age: 53 year
donor ID: ENCDO793LXB
lab: Michael Snyder, Stanford

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: general protocol: https://www.encodeproject.org/documents/a6e8aca1-c1e5-4ad7-bceb-8ca2e661b909/@@download/attachment/ChIP-Seq%20Biorupter%20Pico%20BravoTruSeq%20protocol%20for%20Syapse.pdf

Sequencing Platform

instrument_model: Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 26386426
Reads aligned (%): 98.4
Duplicates removed (%): 3.0
Number of peaks: 998 (qval < 1E-05)

hg19

Number of total reads: 26386426
Reads aligned (%): 97.3
Duplicates removed (%): 3.2
Number of peaks: 437 (qval < 1E-05)

Base call quality data from DBCLS SRA