Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Neural
Cell type
Fetal neural cells
NA
NA

Attributes by original data submitter

Sample

sex
male
cell type
neural cell
lab
Michael Snyder, Stanford
sample_type
in vitro differentiated cells
health state
healthy
age
unknown
donor ID
ENCDO000AAW
dev_stage
embryonic

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/d6c4ad11-71ce-4cf4-97f1-7f635d2de09b/@@download/attachment/ChIP-Seq_protocol_Snyder_lab_HiSeq.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
39946046
Reads aligned (%)
93.3
Duplicates removed (%)
73.0
Number of peaks
31682 (qval < 1E-05)

hg19

Number of total reads
39946046
Reads aligned (%)
92.9
Duplicates removed (%)
73.4
Number of peaks
31154 (qval < 1E-05)

Base call quality data from DBCLS SRA