Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

tissue

liver

age

6 year

donor ID

ENCDO059AAA

dev stage

child

sample type

tissue

sex

female

health state

healthy

lab

Thomas Gingeras, CSHL

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/2abad4f0-cd36-43de-8cd8-9958aa7fde39/@@download/attachment/ChIP-Seq_protocol_Snyder_lab_GAIIx.pdf

Sequencing Platform

instrument_model

Illumina Genome Analyzer IIx

hg38

Number of total reads

32476347

Reads aligned (%)

97.8

Duplicates removed (%)

4.9

Number of peaks

27961 (qval < 1E-05)

hg19

Number of total reads

32476347

Reads aligned (%)

97.0

Duplicates removed (%)

6.2

Number of peaks

28173 (qval < 1E-05)