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For hg38
BigWig
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For hg19
BigWig
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Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RNA polymerase II
wikigenes
PDBj
CellType: Esophagus muscularis mucosa
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX5457368
GSM3635857: ChIP-seq from esophagus muscularis mucosa (ENCLB072BNC); Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
RNA polymerase
Antigen
RNA polymerase II
Cell type
Cell type Class
Digestive tract
Cell type
Esophagus muscularis mucosa
NA
NA
Attributes by original data submitter
Sample
sex
male
tissue
esophagus muscularis mucosa
lab
Richard Myers, HAIB
sample_type
tissue
age
37 year
donor ID
ENCDO845WKR
dev_stage
adult
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction protocol: https://www.encodeproject.org/documents/a59e54bc-ec64-4401-8cf6-b60161e1eae9/@@download/attachment/EN-TEx%20ChIP-seq%20Protocol%20-%20Myers%20Lab.pdf extraction method: see document extraction protocol: https://www.encodeproject.org/documents/a59e54bc-ec64-4401-8cf6-b60161e1eae9/@@download/attachment/EN-TEx%20ChIP-seq%20Protocol%20-%20Myers%20Lab.pdf
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
21705381
Reads aligned (%)
83.5
Duplicates removed (%)
6.8
Number of peaks
21338 (qval < 1E-05)
hg19
Number of total reads
21705381
Reads aligned (%)
82.9
Duplicates removed (%)
7.0
Number of peaks
21281 (qval < 1E-05)
Base call quality data from
DBCLS SRA