Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Epidermis
Cell type
Leg skin
NA
NA

Attributes by original data submitter

Sample

sex
male
tissue
lower leg skin
lab
Michael Snyder, Stanford
sample_type
tissue
age
37 year
donor ID
ENCDO845WKR
dev_stage
adult

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/a6e8aca1-c1e5-4ad7-bceb-8ca2e661b909/@@download/attachment/ChIP-Seq%20Biorupter%20Pico%20BravoTruSeq%20protocol%20for%20Syapse.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
55076947
Reads aligned (%)
94.6
Duplicates removed (%)
49.6
Number of peaks
6201 (qval < 1E-05)

hg19

Number of total reads
55076947
Reads aligned (%)
93.4
Duplicates removed (%)
50.2
Number of peaks
5198 (qval < 1E-05)

Base call quality data from DBCLS SRA