Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Pancreas

Cell type

PANC-1

Tissue

Pancreas/Duct

Disease

Epithelioid Carcinoma

Sample

sex

male

cell line

Panc1

lab

Michael Snyder, Stanford

sample_type

immortalized cell line

health state

pancreatic carcinoma

age

56 year

donor ID

ENCDO000ABB

dev_stage

unknown

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/cb7763f5-eb24-47cd-9b7c-25450afff3cd/@@download/attachment/160406_Farnham_Histone_ChIP_CNON_and_Library_Protocol.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

49351314

Reads aligned (%)

86.5

Duplicates removed (%)

3.3

Number of peaks

2026 (qval < 1E-05)

hg19

Number of total reads

49351314

Reads aligned (%)

84.6

Duplicates removed (%)

3.6

Number of peaks

1519 (qval < 1E-05)