Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

sample type
cell line
cell line
H1-hESC
sex
male
health state
healthy
dev_stage
embryonic
age
unknown
donor ID
ENCDO000AAW
lab
Michael Snyder, Stanford

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/2abad4f0-cd36-43de-8cd8-9958aa7fde39/@@download/attachment/ChIP-Seq_protocol_Snyder_lab_GAIIx.pdf

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
42648852
Reads aligned (%)
98.5
Duplicates removed (%)
4.2
Number of peaks
1087 (qval < 1E-05)

hg19

Number of total reads
42648852
Reads aligned (%)
97.7
Duplicates removed (%)
5.3
Number of peaks
1207 (qval < 1E-05)

Base call quality data from DBCLS SRA