Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Digestive tract

Cell type

Colon, Sigmoid

MeSH Description

A segment of the COLON between the RECTUM and the descending colon.

Sample

sex

female

tissue

sigmoid colon

lab

Richard Myers, HAIB

sample_type

tissue

age

51 year

donor ID

ENCDO271OUW

dev_stage

adult

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

extraction protocol: https://www.encodeproject.org/documents/a59e54bc-ec64-4401-8cf6-b60161e1eae9/@@download/attachment/EN-TEx%20ChIP-seq%20Protocol%20-%20Myers%20Lab.pdf extraction method: see document extraction protocol: https://www.encodeproject.org/documents/a59e54bc-ec64-4401-8cf6-b60161e1eae9/@@download/attachment/EN-TEx%20ChIP-seq%20Protocol%20-%20Myers%20Lab.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

37556025

Reads aligned (%)

87.9

Duplicates removed (%)

1.9

Number of peaks

1195 (qval < 1E-05)

hg19

Number of total reads

37556025

Reads aligned (%)

87.0

Duplicates removed (%)

2.2

Number of peaks

814 (qval < 1E-05)