Antigen

Antigen Class

TFs and others

Antigen

ZNF444

Cell type

Cell type Class

Breast

Cell type

MCF-7

Primary Tissue

Breast

Site of Extraction

Pleura

Tissue Diagnosis

Adenocarcinoma

Sample

sex

female

cell line

MCF-7

lab

Michael Snyder, Stanford

sample_type

immortalized cell line

health state

breast cancer (adenocarcinoma)

age

69 year

donor ID

ENCDO000AAE

dev_stage

adult

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/a6e8aca1-c1e5-4ad7-bceb-8ca2e661b909/@@download/attachment/ChIP-Seq%20Biorupter%20Pico%20BravoTruSeq%20protocol%20for%20Syapse.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

27042903

Reads aligned (%)

85.4

Duplicates removed (%)

4.6

Number of peaks

9525 (qval < 1E-05)

hg19

Number of total reads

27042903

Reads aligned (%)

84.5

Duplicates removed (%)

4.7

Number of peaks

9011 (qval < 1E-05)