Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Uterus

Cell type

Vagina

MeSH Description

The genital canal in the female, extending from the UTERUS to the VULVA. (Stedman, 25th ed)

Sample

sex

female

tissue

vagina

lab

Richard Myers, HAIB

sample_type

tissue

age

51 year

donor ID

ENCDO271OUW

dev_stage

adult

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

extraction protocol: https://www.encodeproject.org/documents/a59e54bc-ec64-4401-8cf6-b60161e1eae9/@@download/attachment/EN-TEx%20ChIP-seq%20Protocol%20-%20Myers%20Lab.pdf extraction method: see document extraction protocol: https://www.encodeproject.org/documents/a59e54bc-ec64-4401-8cf6-b60161e1eae9/@@download/attachment/EN-TEx%20ChIP-seq%20Protocol%20-%20Myers%20Lab.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

78860535

Reads aligned (%)

91.7

Duplicates removed (%)

3.3

Number of peaks

2053 (qval < 1E-05)

hg19

Number of total reads

78860535

Reads aligned (%)

90.8

Duplicates removed (%)

3.7

Number of peaks

1016 (qval < 1E-05)