SRX5457114
GSM3633990: WGBS from esophagus squamous epithelium (ENCLB776RBC); Homo sapiens; Bisulfite-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq

Cell type

Cell type Class
Digestive tract
Cell type
Esophagus squamous epithelium
NA
NA

Attributes by original data submitter

Sample

sample type
tissue
tissue
esophagus squamous epithelium
sex
male
dev_stage
adult
age
54 year
donor ID
ENCDO451RUA
lab
Richard Myers, HAIB

Sequenced DNA Library

library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/9d9cbba0-5ebe-482b-9fa3-d93a968a7045/@@download/attachment/WGBS_V4_protocol.pdf

Sequencing Platform

instrument_model
HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
578458413
Reads aligned (%)
89.6
Coverage rate (×)
11.1
Number of hyper MRs
232403 (qval < 1E-05)

hg19

Number of total reads
578458413
Reads aligned (%)
89.5
Coverage rate (×)
12.1
Number of hyper MRs
214800 (qval < 1E-05)

Base call quality data from DBCLS SRA