SRX5457079
GSM3633637: WGBS from SK-N-SH (ENCLB721ONH); Homo sapiens; Bisulfite-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq

Cell type

Cell type Class
Neural
Cell type
SK-N-SH
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

sample type
cell line
cell line
SK-N-SH
sex
female
health state
Metastatic neuroblastoma from bone marrow
dev_stage
child
age
4 year
donor ID
ENCDO000ABD
lab
Richard Myers, HAIB

Sequenced DNA Library

library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/9d9cbba0-5ebe-482b-9fa3-d93a968a7045/@@download/attachment/WGBS_V4_protocol.pdf

Sequencing Platform

instrument_model
HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
938475836
Reads aligned (%)
93.9
Coverage rate (×)
17.0
Number of hyper MRs
299265 (qval < 1E-05)

hg19

Number of total reads
938475836
Reads aligned (%)
93.7
Coverage rate (×)
18.5
Number of hyper MRs
285390 (qval < 1E-05)

Base call quality data from DBCLS SRA