Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq

Cell type

Cell type Class
Neural
Cell type
SK-N-SH
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

sample type
cell line
cell line
SK-N-SH
sex
female
health state
Metastatic neuroblastoma from bone marrow
dev_stage
child
age
4 year
donor ID
ENCDO000ABD
lab
Richard Myers, HAIB

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
858773600
Reads aligned (%)
93.4
Coverage rate (×)
15.9
Number of hyper MRs
299054 (qval < 1E-05)

hg19

Number of total reads
858773600
Reads aligned (%)
93.2
Coverage rate (×)
17.3
Number of hyper MRs
288476 (qval < 1E-05)

Base call quality data from DBCLS SRA