SRX5453203
ATAC-seq of Mus musculus CD4 Tcells: Spleen Ctrl S2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

strain
C57BL/6
dev_stage
adult
sex
pooled male and female
tissue
Spleen
birth_location
WEHI, Melbourne
cell_type
CD4 T cell
genotype
WT
sample_type
ATAC-seq
replicate
No biological replicates

Sequenced DNA Library

library_name
Sp-CD4-ctrl_S2
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
28775928
Reads aligned (%)
84.0
Duplicates removed (%)
60.8
Number of peaks
18009 (qval < 1E-05)

mm9

Number of total reads
28775928
Reads aligned (%)
83.9
Duplicates removed (%)
60.9
Number of peaks
17997 (qval < 1E-05)

Base call quality data from DBCLS SRA